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Glossary

Glossary: terms used in species descriptions · Last updated 2026-06-15 · 106 terms

A

acicular
needle-shaped
acute
sharp angle (<90 degrees)
alkalinity
mg CaCO₃ L⁻¹
amoeboid
amoeba like
antapex
the point opposite to the tip of the cell on its other end
antapical
opposite to the tip of the cell on its other end
anterior
situated at the front side, opposite of posterior
apex (plural: apices)
tip of a cell (in species that have one or more attenuated endings)
apical axis
in diatoms: axis linking the two poles of a valve
apiculate
terminating in a short, sharp, flexible point. In diatoms: having a short broad tip see Cox (1996) Plate 2
aplanospores
non-motile spores formed asexually within the parent cell, having no flagella
arcuate
see Cox (1996) Plate 1
areola (plural: areolae)
a regular, repeated perforation through the siliceous layer on the valve of a diatom cell
athecate
in dinoflagellates: ‘naked’, not having thecae, not being enclosed in a shell of cellulose plates
attenuated
long, narrow and sometimes tapering
autogamy
non-sexual reproduction, self-fertilization or conjugation in an individual organism by division of its nucleus into two parts that in turn reunite to form a zygote
auxospore
large cell resulting from sexual reproduction or autogamy. In diatoms, they lack the rigid valves, instead they are covered by delicate siliceous scales or bands
axial
along the axis

B

bilateral symmetry
symmetry about a single middle line
broad linear
see Cox (1996) Plate 1

C

capitate
having a part that is enlarged and rounded see Cox (1996) Plate 2
caudus
‘tail’ of euglenophytes
cingulum (plural: cingula)
portion of the diatom girdle associated with a single valve. In dinoflagellates: a transverse groove that encircles the cell and holds the transverse flagellum in place.
conductivity
specific conductance, μS cm⁻¹
conjugation
a form of sexual reproduction where neither gamete is flagellated. This type of reproduction, typical of the Zygnematalean (conjugating) green algae, cells attach to each other so that the gametes can fuse.
costa (Plural: costae)
rib-like longitudinal cell wall thickening

D

dorsal
back side, opposite of ventral
dorsiventral
in diatoms: a cell with different curvature to its two sides connecting the apices see Cox (1996) Plate 2

E

epitheca
in dinoflagellates: the upper theca of the dinoflagellate cellulose shell, which together with the hypotheca makes a full cell covering.
eulittoral zone
the lake region between maximum and minimum water level.
eyespot
light-sensitive, typically red-colored (carotenoid pigments) spot or organelle in algal cells

F

fibula (plural: fibulae)
in diatoms: a bridge of silica between portions of the valve on either side of the raphe
flagellum (plural: flagella)
long, thread-like organelle that projects out of the cell and functions in motility
frustule
the cell wall of a diatom cell, composed of silica, comprised of two valves and a series of linking bands, the girdle
fusiform
elongated shape that is widest in the middle and tapering towards the ends. Spindle shape. Like an American football

G

gametangium (plural: gametangia)
a cell containing the gametes
gamete
sex cell
girdle
the region in a diatom frustule (shell) where the two valves overlap
girdle view
in diatoms, the way the cell looks under the microscope when examined looking at the girdle of the cell (as opposed to the valve view, i.e. looking at the valve face of the cell)
gullet
a longitudinal depression in the upper part of a cryptophyte, chrysophyte or euglenophyte cell from which a flagellum or flagella emerge

H

haptonema
a thread-like appendage between the 2 flagella of Haptophytes
heteropolar
having different poles. In diatoms: with apices of differing size and/or shape
hyaline
colorless, translucent, clear
hypotheca
in dinoflagellates: the lower theca of the dinoflagellate cellulose shell, which together with the epitheca makes a full cell covering

I

intercalary cell
located between two other cells in a filament
isogamous (isogamy)
sexual reproduction in which two types of gametes are morphologically indistinguishable, although functionally they are different.
isopolar
having the same poles. In diatoms: with apices of the same size and shape
isthmus
in desmids: the narrow mid-region of the cell connecting the two semicells. The nucleus is located in this mid-region

L

lanceolate
see Cox (1996) Plate 1
linear
see Cox (1996) Plate 1
linear-lanceolate
see Cox (1996) Plate 1
lorica
a protective case containing a naked (non-walled) cell
lunate
shape of a moon in its first quarter. see Cox (1996) Plate 1

M

mantle
see valve mantle

O

oogamy (oogamous)
sexual reproduction in which there is a fusion of a smaller flagellated male gamete (e.g. spermatozoid) with a larger, non-flagellated female gamete (e.g. egg or oogonium)
oogonium (plural: oogonia)
large, single-celled female gametanium that may produce one or more eggs.

P

papilla
(plural: papillae) protuberance or swelling
paramylon
a carbohydrate stored in euglenophytes in ‘paramylon bodies’
parietal
positioned by the cell wall
pellicle
in euglenoids, the outer proteinaceous cell surface layer (or peripheral protoplasmic layer), often in a spiral arrangement
pentangular
having 5 sides
posterior
situated at the rear or back side, opposite of anterior
process
a part that naturally grows on or sticks out on an organism
protoplast
the living material inside a cell. In thecate dinoflagellates the protoplasts are membrane-bound and can emerge out of their thecae
puncta (singular: punctum)
minute depressions on the diatom valve or the desmid cell wall
punctate
ornamented with dots (=puncta)
pyrenoid
organelle, often spherical, associated with the chloroplast containing the enzyme Rubisco
pyriform
pear-shaped

R

radial symmetry
symmetry resembling that of a pie, where several cutting planes produce roughly identical pieces. There is no left or right side, only top (dorsal) and bottom (ventral) sides
raphe
in diatoms, a pair of slit-like structures in one or both valves associated with the gliding movement
reniform
kidney shaped
retuse
having the end rounded and slightly indented; like a retuse leaf
rostrate
see Cox (1996) Plate 2

S

scalariform conjugation
ladder-like; in members of conjugatophycea a type of conjugation where the conjugation tube forms between two parallel filaments
septum (plural: septa)
in diatoms: cross-partitioning on a girdle element projecting into or dividing a cell into chambers
serrulate
finely serrated. Having a finely notched edge like the teeth of a saw
sinus
in desmids: the median incision dividing the desmid cell into two semicells
spinule(s)
minute spine or thorn-like projection(s)
sternum
in diatoms: a hyaline region, without striae, running a long the long axis of a valve in araphid diatoms
stigma
see; eyespot
stria (plural: striae)
stripe(s), line of pores on the diatom valve
subcapitate
see Cox (1996) Plate 2
subrostrate
see Cox (1996) Plate 2
sulcus
in dinoflagellates: a longitudinal groove in the ventral face of the cell, in hypotheca/hypocone that may extend into the epitheca/epicone; hold the longitudinal whiplash flagellum
suture
Line or groove, especially in desmids, marking the limits between adjacent semicells. In filamentous zygnematales: groove around zygospore. In armored dinoflagellates: groove between the plates

T

tapering
narrowing, ending in a point
theca (Plural: thecae)
in dinoflagellates: a cell covering made of cellulose plates. Usually each cell has 2 thecae (an epi-theca and a hypo-theca), which together fully encase the cell
thecate
in dinoflagellates: having thecae, being enclosed in a shell of cellulose plates which makes the cell look ‘armored’
transapical axis
in diatoms: axis linking the mid-points of opposing valve margins, intersecting the middle of the apical axis
transverse
passing through a hyperbola’s foci
trichocyst
in cryptophytes, dinoflagellates and raphidophytes: membrane surrounded organelle lying beneath the cell surface, which ejects threads of mucilage on stimulation
truncate
cut off, trimmed
tychoplanktonic
species that are predominantly planktonic but are capable of prolonged survival on or in sediments

U

undulate (adj)
with a wavy appearance, edge or marking
undulation
a curving form or outline, especially one in a series such as a wave

V

valve
one of two halves of the diatom silicaceous shell (=frustule). The two valves usually have the same shape, but since one fits into the other as in a petri dish, they are of different size
valve face
the round part of the valve
valve mantle
the marginal part of the valve, differentiated by slope and/or structure
valve margin
the edge of the valve where the cingulum begins
valve view
in diatoms, the way the cell looks under the microscope when examined looking at the valve face of the cell (as opposed to the girdle view, i.e. looking at the side face of the cell)
ventral
front side, opposite of dorsal
verruca (Plural: verrucae)
wart(s) or spiny projection(s)
verrucose
covered with warty or spiny projections

Z

zoosporangium
cell producing zoospores
zoospore
motile asexual spore
zygospore
thick-walled resting spore formed sexually by the fusion of two gametes

Cox (1996) reference plates

Glossary Plate 1 from Cox (1996)
Plate 1
Glossary Plate 2 from Cox (1996)
Plate 2

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